STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GspG-2Type II secretion system protein GspG. (123 aa)    
Predicted Functional Partners:
GspG
Type II secretion system protein GspG.
  
  
 
0.919
GspG-3
Type II secretion system protein GspG.
  
  
 
0.912
AL038_09685
Uncharacterized protein.
  
 
  0.902
GspK
Type II secretion system protein K.
 
 
 0.806
GspD-2
Type II secretion system protein GspD.
 
  
 0.799
GspD
Type II secretion system protein GspD.
 
  
 0.796
AL038_11245
Uncharacterized protein.
 
 
 0.702
GspE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.626
GspJ
Type II secretion system protein GspJ.
 
 
 0.610
GspF
Type II secretion system protein GspF.
 
  
 0.578
Your Current Organism:
Beggiatoa leptomitoformis
NCBI taxonomy Id: 288004
Other names: B. leptomitoformis, Beggiatoa leptomitiformis, Beggiatoa leptomitoformis Dubinina et al. 2017, Beggiatoa sp. D-402, DSM 14946, UNIQEM U 779, strain D-402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.