STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL038_01450Type I restriction enzyme R Protein; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1018 aa)    
Predicted Functional Partners:
AL038_01460
Type I restriction-modification system subunit M.
 
 
 0.976
AL038_01455
Uncharacterized protein.
 
  
 0.973
AL038_01445
Metal-dependent hydrolase.
 
   
 0.949
AL038_06900
Uncharacterized protein.
 
 
 0.876
AL038_15000
N6_Mtase domain-containing protein.
 
 
 0.833
AL038_07560
Type I restriction-modification system subunit M.
 
 0.815
AL038_07550
Uncharacterized protein.
 
  
 0.733
AL038_15400
Type I restriction endonuclease subunit M.
  
 
 0.556
AL038_15405
Fido domain-containing protein.
  
    0.544
vapC
Ribonuclease VapC; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.449
Your Current Organism:
Beggiatoa leptomitoformis
NCBI taxonomy Id: 288004
Other names: B. leptomitoformis, Beggiatoa leptomitiformis, Beggiatoa leptomitoformis Dubinina et al. 2017, Beggiatoa sp. D-402, DSM 14946, UNIQEM U 779, strain D-402
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