STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UrtDUrea ABC transporter ATP-binding protein UrtD. (259 aa)    
Predicted Functional Partners:
UrtC
Urea ABC transporter permease subunit UrtC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
UrtB
Urea ABC transporter permease subunit UrtB; Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
UrtA
Urea ABC transporter substrate-binding protein.
 
  
 0.965
AL038_12515
Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
  
 0.925
LivM
Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.913
AL038_12505
ABC transporter ATP-binding protein.
  
0.913
UrtE
Urea ABC transporter ATP-binding subunit UrtE.
 
 
0.876
ureE
Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
   
 0.619
AL038_07940
Urease accessory protein.
 
   
 0.610
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.588
Your Current Organism:
Beggiatoa leptomitoformis
NCBI taxonomy Id: 288004
Other names: B. leptomitoformis, Beggiatoa leptomitiformis, Beggiatoa leptomitoformis Dubinina et al. 2017, Beggiatoa sp. D-402, DSM 14946, UNIQEM U 779, strain D-402
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