STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL038_03905Uncharacterized protein. (442 aa)    
Predicted Functional Partners:
AL038_03910
Peptidase C69.
 
    0.949
AL038_05845
Uncharacterized protein.
  
     0.582
AL038_03915
Uncharacterized protein.
 
     0.574
AL038_11785
Haemagg_act domain-containing protein.
  
     0.531
AL038_17415
DUF4340 domain-containing protein.
  
     0.504
AL038_04640
Vitellogenin domain-containing protein.
  
     0.466
AL038_09225
Filamentous hemagglutinin.
  
     0.452
AL038_05360
Uncharacterized protein.
  
     0.435
AL038_14750
Filamentous hemagglutinin.
  
     0.435
AL038_05330
Haemagg_act domain-containing protein.
  
     0.421
Your Current Organism:
Beggiatoa leptomitoformis
NCBI taxonomy Id: 288004
Other names: B. leptomitoformis, Beggiatoa leptomitiformis, Beggiatoa leptomitoformis Dubinina et al. 2017, Beggiatoa sp. D-402, DSM 14946, UNIQEM U 779, strain D-402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.