STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL038_11700Two-component system response regulator. (120 aa)    
Predicted Functional Partners:
AL038_11690
Uncharacterized protein.
 
 0.979
AL038_11695
CheW-like domain-containing protein.
 
 
  0.970
AL038_03235
Uncharacterized protein.
 
 
0.969
AL038_11680
Uncharacterized protein.
 
0.954
AL038_10085
Two-component system response regulator.
  
 
0.914
AL038_05195
Uncharacterized protein.
 
 
0.825
AL038_09990
Uncharacterized protein.
 
   0.816
PhoR
Histidine kinase domain-containing protein.
 
 0.807
AL038_04920
Histidine kinase domain-containing protein.
  
   0.782
AL038_04500
Histidine kinase.
 
 0.781
Your Current Organism:
Beggiatoa leptomitoformis
NCBI taxonomy Id: 288004
Other names: B. leptomitoformis, Beggiatoa leptomitiformis, Beggiatoa leptomitoformis Dubinina et al. 2017, Beggiatoa sp. D-402, DSM 14946, UNIQEM U 779, strain D-402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.