STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL038_12105ABC transporter permease. (274 aa)    
Predicted Functional Partners:
AL038_10855
ABC transporter ATP-binding protein.
 
 0.989
AL038_14265
ABC transporter.
 
 0.987
AL038_14270
Transport permease protein.
  
  
  0.976
AL038_08790
Glyco_trans_2-like domain-containing protein.
 
  
 0.813
AL038_04820
Glycosyltransferase.
 
  
 0.673
AL038_08325
dTDP-Rha--alpha-D-GlcNAc-pyrophosphate polyprenol alpha-3-L-rhamnosyltransferase.
 
  
 0.636
AL038_06570
Glyco_trans_2-like domain-containing protein.
 
  
 0.537
Glf
UDP-galactopyranose mutase.
  
  
 0.511
AL038_04295
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.505
AL038_07195
Capsular biosynthesis protein.
  
  
 0.485
Your Current Organism:
Beggiatoa leptomitoformis
NCBI taxonomy Id: 288004
Other names: B. leptomitoformis, Beggiatoa leptomitiformis, Beggiatoa leptomitoformis Dubinina et al. 2017, Beggiatoa sp. D-402, DSM 14946, UNIQEM U 779, strain D-402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.