Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AL038_03595 | AL038_12950 | AL038_03595 | AL038_12950 | Glutamate synthase. | Uncharacterized protein. | 0.954 |
AL038_03595 | AL038_16170 | AL038_03595 | AL038_16170 | Glutamate synthase. | Pyridine nucleotide-disulfide oxidoreductase. | 0.491 |
AL038_03595 | carB | AL038_03595 | AL038_02720 | Glutamate synthase. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.910 |
AL038_03595 | pyrD | AL038_03595 | AL038_11035 | Glutamate synthase. | Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.435 |
AL038_12950 | AL038_03595 | AL038_12950 | AL038_03595 | Uncharacterized protein. | Glutamate synthase. | 0.954 |
AL038_12950 | AL038_16170 | AL038_12950 | AL038_16170 | Uncharacterized protein. | Pyridine nucleotide-disulfide oxidoreductase. | 0.964 |
AL038_12950 | NifU | AL038_12950 | AL038_06480 | Uncharacterized protein. | Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.685 |
AL038_12950 | carB | AL038_12950 | AL038_02720 | Uncharacterized protein. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.676 |
AL038_12950 | nuoD | AL038_12950 | AL038_09080 | Uncharacterized protein. | NADH-quinone oxidoreductase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.650 |
AL038_12950 | pyrB | AL038_12950 | AL038_17380 | Uncharacterized protein. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.653 |
AL038_12950 | pyrD | AL038_12950 | AL038_11035 | Uncharacterized protein. | Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.838 |
AL038_12950 | pyrE | AL038_12950 | AL038_02160 | Uncharacterized protein. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.761 |
AL038_12950 | pyrF | AL038_12950 | AL038_14435 | Uncharacterized protein. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.699 |
AL038_12950 | ribB | AL038_12950 | AL038_02475 | Uncharacterized protein. | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.802 |
AL038_16170 | AL038_03595 | AL038_16170 | AL038_03595 | Pyridine nucleotide-disulfide oxidoreductase. | Glutamate synthase. | 0.491 |
AL038_16170 | AL038_12950 | AL038_16170 | AL038_12950 | Pyridine nucleotide-disulfide oxidoreductase. | Uncharacterized protein. | 0.964 |
AL038_16170 | NifU | AL038_16170 | AL038_06480 | Pyridine nucleotide-disulfide oxidoreductase. | Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.424 |
AL038_16170 | carB | AL038_16170 | AL038_02720 | Pyridine nucleotide-disulfide oxidoreductase. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.812 |
AL038_16170 | nuoD | AL038_16170 | AL038_09080 | Pyridine nucleotide-disulfide oxidoreductase. | NADH-quinone oxidoreductase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. | 0.495 |
AL038_16170 | pyrB | AL038_16170 | AL038_17380 | Pyridine nucleotide-disulfide oxidoreductase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.815 |
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