Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AL038_14480 | TilS | AL038_14480 | AL038_14485 | Uncharacterized protein. | TRNA lysidine(34) synthetase TilS. | 0.523 |
AL038_14480 | YhbY | AL038_14480 | AL038_14490 | Uncharacterized protein. | RNA-binding protein. | 0.501 |
ThiS | TilS | AL038_07150 | AL038_14485 | Thiamine biosynthesis protein ThiS. | TRNA lysidine(34) synthetase TilS. | 0.519 |
TilS | AL038_14480 | AL038_14485 | AL038_14480 | TRNA lysidine(34) synthetase TilS. | Uncharacterized protein. | 0.523 |
TilS | ThiS | AL038_14485 | AL038_07150 | TRNA lysidine(34) synthetase TilS. | Thiamine biosynthesis protein ThiS. | 0.519 |
TilS | YhbY | AL038_14485 | AL038_14490 | TRNA lysidine(34) synthetase TilS. | RNA-binding protein. | 0.746 |
TilS | accA | AL038_14485 | AL038_08285 | TRNA lysidine(34) synthetase TilS. | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | 0.687 |
TilS | metG | AL038_14485 | AL038_03105 | TRNA lysidine(34) synthetase TilS. | Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.545 |
TilS | ndk | AL038_14485 | AL038_08095 | TRNA lysidine(34) synthetase TilS. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.724 |
TilS | pheT | AL038_14485 | AL038_14425 | TRNA lysidine(34) synthetase TilS. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.575 |
TilS | pyrG | AL038_14485 | AL038_08375 | TRNA lysidine(34) synthetase TilS. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.529 |
TilS | tadA | AL038_14485 | AL038_01900 | TRNA lysidine(34) synthetase TilS. | tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.940 |
TilS | truB | AL038_14485 | AL038_16535 | TRNA lysidine(34) synthetase TilS. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.476 |
YhbY | AL038_14480 | AL038_14490 | AL038_14480 | RNA-binding protein. | Uncharacterized protein. | 0.501 |
YhbY | TilS | AL038_14490 | AL038_14485 | RNA-binding protein. | TRNA lysidine(34) synthetase TilS. | 0.746 |
accA | TilS | AL038_08285 | AL038_14485 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | TRNA lysidine(34) synthetase TilS. | 0.687 |
metG | TilS | AL038_03105 | AL038_14485 | Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | TRNA lysidine(34) synthetase TilS. | 0.545 |
metG | pheT | AL038_03105 | AL038_14425 | Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.896 |
metG | pyrG | AL038_03105 | AL038_08375 | Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.581 |
metG | tadA | AL038_03105 | AL038_01900 | Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.464 |
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