STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL038_15820TGc domain-containing protein. (671 aa)    
Predicted Functional Partners:
AL038_15825
DUF58 domain-containing protein.
 
  
 0.946
AL038_05255
DUF58 domain-containing protein.
 
  
 0.774
AL038_18060
Magnesium chelatase.
 
     0.628
AL038_05065
AAA family ATPase.
 
     0.622
AL038_17795
Uncharacterized protein.
  
     0.590
AL038_15830
GGACT domain-containing protein.
 
     0.585
AL038_08860
MULTIHEME_CYTC domain-containing protein.
  
     0.469
AL038_13280
Alpha-E domain-containing protein.
  
  
 0.456
AL038_11995
Uncharacterized protein.
 
   
 0.453
AL038_17870
Uncharacterized protein.
  
     0.446
Your Current Organism:
Beggiatoa leptomitoformis
NCBI taxonomy Id: 288004
Other names: B. leptomitoformis, Beggiatoa leptomitiformis, Beggiatoa leptomitoformis Dubinina et al. 2017, Beggiatoa sp. D-402, DSM 14946, UNIQEM U 779, strain D-402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.