STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL038_17150AAA family ATPase. (325 aa)    
Predicted Functional Partners:
AL038_17145
DUF58 domain-containing protein.
 
    0.946
AL038_01005
DUF58 domain-containing protein.
 
    0.786
AL038_03705
VWFA domain-containing protein.
 
    0.696
AL038_07790
VWFA domain-containing protein.
  
    0.688
AL038_08420
BatB protein.
 
    0.676
AL038_13315
Ca-activated chloride channel homolog.
 
  
 0.632
AL038_10325
Uncharacterized protein.
 
    0.490
AL038_05670
TPR_REGION domain-containing protein.
  
     0.453
AL038_01015
Uncharacterized protein.
 
    0.426
AL038_08180
DUF58 domain-containing protein.
    0.414
Your Current Organism:
Beggiatoa leptomitoformis
NCBI taxonomy Id: 288004
Other names: B. leptomitoformis, Beggiatoa leptomitiformis, Beggiatoa leptomitoformis Dubinina et al. 2017, Beggiatoa sp. D-402, DSM 14946, UNIQEM U 779, strain D-402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.