STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY21814.1Hypothetical membrane protein. (256 aa)    
Predicted Functional Partners:
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
       0.603
ftsK
DNA translocase; Belongs to the FtsK/SpoIIIE/SftA family.
   
 
 0.567
ABY24770.1
Thymidylate kinase.
    
   0.559
ABY24165.1
tolB protein precursor/tail-specific protease; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
   0.553
ABY23609.1
Hypothetical membrane protein.
    
 
 0.528
ABY23003.1
Hypothetical membrane protein.
  
     0.516
ABY24161.1
Carboxypeptidase T precursor.
 
   0.516
ABY24420.1
Hypothetical cytosolic protein.
  
     0.484
tadA
tRNA-specific adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.452
ABY21817.1
Hypothetical membrane protein.
       0.452
Your Current Organism:
Renibacterium salmoninarum
NCBI taxonomy Id: 288705
Other names: R. salmoninarum ATCC 33209, Renibacterium salmoninarum ATCC 33209, Renibacterium salmoninarum str. ATCC 33209, Renibacterium salmoninarum strain ATCC 33209
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