STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY22712.1Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family. (361 aa)    
Predicted Functional Partners:
ABY22711.1
Conserved hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands.
 
    0.859
ABY23321.1
HesB protein family; Belongs to the HesB/IscA family.
 
 
 0.817
ABY22487.1
Hypothetical protein.
  
     0.600
ABY23592.1
L-asparaginase.
      0.576
ABY22709.1
Predicted permease.
       0.558
ABY22151.1
DNA polymerase III, delta' subunit.
  
     0.542
ABY23413.1
Methyltransferase.
 
     0.480
ABY23669.1
DNA polymerase III, delta subunit.
  
    0.430
ABY22973.1
ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
     0.424
ABY23593.1
Conserved hypothetical protein.
  
     0.423
Your Current Organism:
Renibacterium salmoninarum
NCBI taxonomy Id: 288705
Other names: R. salmoninarum ATCC 33209, Renibacterium salmoninarum ATCC 33209, Renibacterium salmoninarum str. ATCC 33209, Renibacterium salmoninarum strain ATCC 33209
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