STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY23410.1Selenocysteine lyase. (408 aa)    
Predicted Functional Partners:
moeB
Molybdopterin biosynthesis protein.
   
 0.983
iscU
IscU.
  
 0.976
ABY23143.1
Thiosulfate sulfurtransferase; Partial, N-terminus.
  
 0.916
ABY24098.1
Thiosulfate sulfurtransferase.
  
 0.916
ABY23257.1
Selenocysteine lyase.
  
  
 
0.909
ABY24383.1
phenylacetyl-CoA 2-monooxygenase electron transfer component.
  
 0.893
mnmA
tRNA methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
  
 0.886
ABY23321.1
HesB protein family; Belongs to the HesB/IscA family.
 
  
 0.726
ABY24265.1
Heterocyst glycolipid synthase.
   
 
 0.706
dnaK
Chaperone protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
  
 0.626
Your Current Organism:
Renibacterium salmoninarum
NCBI taxonomy Id: 288705
Other names: R. salmoninarum ATCC 33209, Renibacterium salmoninarum ATCC 33209, Renibacterium salmoninarum str. ATCC 33209, Renibacterium salmoninarum strain ATCC 33209
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.