STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY23810.1Glutamate decarboxylase; Belongs to the group II decarboxylase family. (466 aa)    
Predicted Functional Partners:
ABY24329.1
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.959
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
 
 0.950
ABY23674.1
Proline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.933
ABY25159.1
Aldehyde dehydrogenase (NAD(P)+); Partial, N-terminus; Belongs to the aldehyde dehydrogenase family.
   
 0.916
ABY24173.1
Glutamine synthetase.
  
 
 0.914
ABY24189.1
Glutamine synthetase.
  
 
 0.914
ABY22350.1
Glutamine synthetase.
  
 
 0.911
ABY21790.1
Gamma-glutamyltranspeptidase; Partial, C-terminus.
     
 0.908
ABY23359.1
NAD-specific glutamate dehydrogenase.
     
 0.908
ABY24059.1
Glutamate synthase [NADPH] large chain; Partial, C-terminus.
     
 0.908
Your Current Organism:
Renibacterium salmoninarum
NCBI taxonomy Id: 288705
Other names: R. salmoninarum ATCC 33209, Renibacterium salmoninarum ATCC 33209, Renibacterium salmoninarum str. ATCC 33209, Renibacterium salmoninarum strain ATCC 33209
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