STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY23972.1Penicillin-binding protein, transpeptidase. (659 aa)    
Predicted Functional Partners:
ABY24520.1
Multimodular transpeptidase-transglycosylase.
 
 
 
 0.822
ftsW.1
Cell division protein; Belongs to the SEDS family.
 
 
 0.784
ftsQ
FtsQ; Essential cell division protein.
  
 
 0.720
ftsW.2
Cell division protein; Belongs to the SEDS family.
 
 
 0.690
ABY23096.1
Peptidoglycan-specific endopeptidase, M23 family.
 
   
 0.633
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
 
  
 0.631
ABY23974.1
ABC-type multidrug transport system, permease component.
 
     0.613
ABY23975.1
Heme O monooxygenase.
 
     0.610
ABY23973.1
ABC-type multidrug transport system ATPase component.
       0.558
ABY23968.1
Rieske-type ferredoxin.
       0.539
Your Current Organism:
Renibacterium salmoninarum
NCBI taxonomy Id: 288705
Other names: R. salmoninarum ATCC 33209, Renibacterium salmoninarum ATCC 33209, Renibacterium salmoninarum str. ATCC 33209, Renibacterium salmoninarum strain ATCC 33209
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.