STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaAPhenylacetic acid degradation protein. (328 aa)    
Predicted Functional Partners:
paaB
Phenylacetic acid degradation protein.
 0.999
paaC
Phenylacetic acid degradation protein.
  
  0.998
ABY24383.1
phenylacetyl-CoA 2-monooxygenase electron transfer component.
 
 0.997
paaD
Phenylacetic acid degradation protein.
 
 
 0.996
paaI
Phenylacetic acid degradation protein.
 
 
 0.981
ABY24398.1
Coenzyme F390 synthetase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.953
ABY24406.1
2-hydroxyphenylacetyl-CoA ring opening enzyme.
 
  
 0.767
ABY24405.1
2-hydroxyphenylacetyl-CoA ring opening enzyme; Partial, C-terminus.
 
  
 0.746
ABY24382.1
enoyl-CoA hydratase.
  
  
 0.706
ABY24388.1
Nucleoside-diphosphate-sugar epimerase.
       0.540
Your Current Organism:
Renibacterium salmoninarum
NCBI taxonomy Id: 288705
Other names: R. salmoninarum ATCC 33209, Renibacterium salmoninarum ATCC 33209, Renibacterium salmoninarum str. ATCC 33209, Renibacterium salmoninarum strain ATCC 33209
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