Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABY25164.1 | ABY25165.1 | RSal33209_3455 | RSal33209_3456 | Tetratricopeptide repeat domain protein. | Hypothetical protein. | 0.959 |
ABY25164.1 | ABY25166.1 | RSal33209_3455 | RSal33209_3457 | Tetratricopeptide repeat domain protein. | Von Willebrand factor type A domain, putative. | 0.959 |
ABY25164.1 | ABY25170.1 | RSal33209_3455 | RSal33209_3461 | Tetratricopeptide repeat domain protein. | Hypothetical cytosolic protein. | 0.862 |
ABY25164.1 | rplA | RSal33209_3455 | RSal33209_0989 | Tetratricopeptide repeat domain protein. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.856 |
ABY25164.1 | rplB | RSal33209_3455 | RSal33209_2162 | Tetratricopeptide repeat domain protein. | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.868 |
ABY25164.1 | rplO | RSal33209_3455 | RSal33209_2145 | Tetratricopeptide repeat domain protein. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.866 |
ABY25164.1 | rplP | RSal33209_3455 | RSal33209_2158 | Tetratricopeptide repeat domain protein. | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.864 |
ABY25164.1 | rpsB | RSal33209_3455 | RSal33209_0527 | Tetratricopeptide repeat domain protein. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.871 |
ABY25164.1 | rpsE | RSal33209_3455 | RSal33209_2147 | Tetratricopeptide repeat domain protein. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.856 |
ABY25164.1 | rpsK | RSal33209_3455 | RSal33209_2118 | Tetratricopeptide repeat domain protein. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.861 |
ABY25165.1 | ABY25164.1 | RSal33209_3456 | RSal33209_3455 | Hypothetical protein. | Tetratricopeptide repeat domain protein. | 0.959 |
ABY25165.1 | ABY25166.1 | RSal33209_3456 | RSal33209_3457 | Hypothetical protein. | Von Willebrand factor type A domain, putative. | 0.993 |
ABY25165.1 | ABY25170.1 | RSal33209_3456 | RSal33209_3461 | Hypothetical protein. | Hypothetical cytosolic protein. | 0.885 |
ABY25166.1 | ABY25164.1 | RSal33209_3457 | RSal33209_3455 | Von Willebrand factor type A domain, putative. | Tetratricopeptide repeat domain protein. | 0.959 |
ABY25166.1 | ABY25165.1 | RSal33209_3457 | RSal33209_3456 | Von Willebrand factor type A domain, putative. | Hypothetical protein. | 0.993 |
ABY25166.1 | ABY25170.1 | RSal33209_3457 | RSal33209_3461 | Von Willebrand factor type A domain, putative. | Hypothetical cytosolic protein. | 0.888 |
ABY25170.1 | ABY25164.1 | RSal33209_3461 | RSal33209_3455 | Hypothetical cytosolic protein. | Tetratricopeptide repeat domain protein. | 0.862 |
ABY25170.1 | ABY25165.1 | RSal33209_3461 | RSal33209_3456 | Hypothetical cytosolic protein. | Hypothetical protein. | 0.885 |
ABY25170.1 | ABY25166.1 | RSal33209_3461 | RSal33209_3457 | Hypothetical cytosolic protein. | Von Willebrand factor type A domain, putative. | 0.888 |
rplA | ABY25164.1 | RSal33209_0989 | RSal33209_3455 | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Tetratricopeptide repeat domain protein. | 0.856 |
page 1 of 4