STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppB_1ABC transporter permease. (321 aa)    
Predicted Functional Partners:
dppC_1
ABC transporter permease.
 
  0.970
gsiA_1
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
  0.963
appF_1
Oligopeptide ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
  0.956
appA_1
Extracellular substrate-binding protein%2Cfamily 5.
  0.954
dppC_2
ABC transporter permease.
 
 
  0.874
gsiD_2
ABC transporter inner membrane protein.
 
 
  0.874
gsiD_5
ABC transporter permease.
 
 
  0.874
gsiD_6
ABC-transport protein%2C inner membrane protein.
 
 
  0.874
gsiD_7
ABC transporter inner membrane protein.
 
 
  0.874
ddpC_3
ABC transporter permease.
 
 
  0.874
Your Current Organism:
Bordetella ansorpii
NCBI taxonomy Id: 288768
Other names: B. ansorpii, strain SMC-8986
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