STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacBD-alanyl-D-alanine carboxypeptidase. (478 aa)    
Predicted Functional Partners:
dacC
Penicillin-binding protein; Belongs to the peptidase S11 family.
     
 0.916
dacA
Penicillin-binding protein; Belongs to the peptidase S11 family.
     
 0.916
SAI71110.1
Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
 
 
 
 0.903
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
  
 0.898
ldcA
Muramoyltetrapeptide carboxypeptidase.
 
  
 0.876
nlpC
Lipoprotein.
    
 0.723
mrcA_1
Penicillin-binding protein 1A.
  
  
 0.707
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
  
  
 0.703
mrcA_2
Penicillin-binding protein.
  
  
 0.701
mltD
Membrane-bound lytic murein transglycosylase D.
 
  
 0.697
Your Current Organism:
Bordetella ansorpii
NCBI taxonomy Id: 288768
Other names: B. ansorpii, strain SMC-8986
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