Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cphA | cphA1 | SAMEA3906486_01925 | SAMEA3906486_01926 | Cyanophycin synthetase. | Cyanophycin synthetase; Belongs to the MurCDEF family. | 0.980 |
cphA | ddl | SAMEA3906486_01925 | SAMEA3906486_00702 | Cyanophycin synthetase. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.548 |
cphA | ftsI | SAMEA3906486_01925 | SAMEA3906486_00710 | Cyanophycin synthetase. | Peptidoglycan synthetase; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. | 0.870 |
cphA | ftsQ | SAMEA3906486_01925 | SAMEA3906486_00701 | Cyanophycin synthetase. | Cell division protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.952 |
cphA | mraY | SAMEA3906486_01925 | SAMEA3906486_00708 | Cyanophycin synthetase. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.933 |
cphA | murC | SAMEA3906486_01925 | SAMEA3906486_00703 | Cyanophycin synthetase. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.972 |
cphA | murD | SAMEA3906486_01925 | SAMEA3906486_00707 | Cyanophycin synthetase. | Peptidoglycan synthesis protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.990 |
cphA | murE | SAMEA3906486_01925 | SAMEA3906486_00709 | Cyanophycin synthetase. | Murein biosynthesis bifunctional protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.996 |
cphA | murG | SAMEA3906486_01925 | SAMEA3906486_00705 | Cyanophycin synthetase. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.969 |
cphA | wecA_2 | SAMEA3906486_01925 | SAMEA3906486_02707 | Cyanophycin synthetase. | O-antigen biosynthesis glycosyltransferase. | 0.933 |
cphA1 | cphA | SAMEA3906486_01926 | SAMEA3906486_01925 | Cyanophycin synthetase; Belongs to the MurCDEF family. | Cyanophycin synthetase. | 0.980 |
cphA1 | ddl | SAMEA3906486_01926 | SAMEA3906486_00702 | Cyanophycin synthetase; Belongs to the MurCDEF family. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.548 |
cphA1 | ftsI | SAMEA3906486_01926 | SAMEA3906486_00710 | Cyanophycin synthetase; Belongs to the MurCDEF family. | Peptidoglycan synthetase; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. | 0.871 |
cphA1 | ftsQ | SAMEA3906486_01926 | SAMEA3906486_00701 | Cyanophycin synthetase; Belongs to the MurCDEF family. | Cell division protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.952 |
cphA1 | mraY | SAMEA3906486_01926 | SAMEA3906486_00708 | Cyanophycin synthetase; Belongs to the MurCDEF family. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.933 |
cphA1 | murC | SAMEA3906486_01926 | SAMEA3906486_00703 | Cyanophycin synthetase; Belongs to the MurCDEF family. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.972 |
cphA1 | murD | SAMEA3906486_01926 | SAMEA3906486_00707 | Cyanophycin synthetase; Belongs to the MurCDEF family. | Peptidoglycan synthesis protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.989 |
cphA1 | murE | SAMEA3906486_01926 | SAMEA3906486_00709 | Cyanophycin synthetase; Belongs to the MurCDEF family. | Murein biosynthesis bifunctional protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.996 |
cphA1 | murG | SAMEA3906486_01926 | SAMEA3906486_00705 | Cyanophycin synthetase; Belongs to the MurCDEF family. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.969 |
cphA1 | wecA_2 | SAMEA3906486_01926 | SAMEA3906486_02707 | Cyanophycin synthetase; Belongs to the MurCDEF family. | O-antigen biosynthesis glycosyltransferase. | 0.933 |
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