SAI66138.1 protein (Bordetella ansorpii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SAI66138.1

Uncharacterized protein conserved in bacteria (DUF2086). (238 aa)

Predicted Functional Partners:

alkB

0.845

ada_1

0.824

SAI66143.1

0.710

vapB

0.548

thpD_1

0.461

SAI72137.1

0.422

Your Current Organism:

Bordetella ansorpii

NCBI taxonomy Id: 288768
Other names: B. ansorpii, strain SMC-8986

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SAI66138.1	SAI66143.1	SAMEA3906486_00802	SAMEA3906486_00805	Uncharacterized protein conserved in bacteria (DUF2086).	Uncharacterized protein conserved in bacteria (DUF2086).	0.710
SAI66138.1	SAI72137.1	SAMEA3906486_00802	SAMEA3906486_03960	Uncharacterized protein conserved in bacteria (DUF2086).	L-proline 4-hydroxylase.	0.422
SAI66138.1	ada_1	SAMEA3906486_00802	SAMEA3906486_00804	Uncharacterized protein conserved in bacteria (DUF2086).	O6-methylguanine-DNA methyltransferase.	0.824
SAI66138.1	alkB	SAMEA3906486_00802	SAMEA3906486_00803	Uncharacterized protein conserved in bacteria (DUF2086).	Alkylated DNA repair protein.	0.845
SAI66138.1	thpD_1	SAMEA3906486_00802	SAMEA3906486_01649	Uncharacterized protein conserved in bacteria (DUF2086).	Ectoine hydroxylase.	0.461
SAI66138.1	vapB	SAMEA3906486_00802	SAMEA3906486_00801	Uncharacterized protein conserved in bacteria (DUF2086).	Antitoxin VapB.	0.548
SAI66143.1	SAI66138.1	SAMEA3906486_00805	SAMEA3906486_00802	Uncharacterized protein conserved in bacteria (DUF2086).	Uncharacterized protein conserved in bacteria (DUF2086).	0.710
SAI66143.1	ada_1	SAMEA3906486_00805	SAMEA3906486_00804	Uncharacterized protein conserved in bacteria (DUF2086).	O6-methylguanine-DNA methyltransferase.	0.909
SAI66143.1	alkB	SAMEA3906486_00805	SAMEA3906486_00803	Uncharacterized protein conserved in bacteria (DUF2086).	Alkylated DNA repair protein.	0.721
SAI66143.1	vapB	SAMEA3906486_00805	SAMEA3906486_00801	Uncharacterized protein conserved in bacteria (DUF2086).	Antitoxin VapB.	0.424
SAI72137.1	SAI66138.1	SAMEA3906486_03960	SAMEA3906486_00802	L-proline 4-hydroxylase.	Uncharacterized protein conserved in bacteria (DUF2086).	0.422
SAI72137.1	thpD_1	SAMEA3906486_03960	SAMEA3906486_01649	L-proline 4-hydroxylase.	Ectoine hydroxylase.	0.745
ada_1	SAI66138.1	SAMEA3906486_00804	SAMEA3906486_00802	O6-methylguanine-DNA methyltransferase.	Uncharacterized protein conserved in bacteria (DUF2086).	0.824
ada_1	SAI66143.1	SAMEA3906486_00804	SAMEA3906486_00805	O6-methylguanine-DNA methyltransferase.	Uncharacterized protein conserved in bacteria (DUF2086).	0.909
ada_1	alkB	SAMEA3906486_00804	SAMEA3906486_00803	O6-methylguanine-DNA methyltransferase.	Alkylated DNA repair protein.	0.865
ada_1	vapB	SAMEA3906486_00804	SAMEA3906486_00801	O6-methylguanine-DNA methyltransferase.	Antitoxin VapB.	0.424
alkB	SAI66138.1	SAMEA3906486_00803	SAMEA3906486_00802	Alkylated DNA repair protein.	Uncharacterized protein conserved in bacteria (DUF2086).	0.845
alkB	SAI66143.1	SAMEA3906486_00803	SAMEA3906486_00805	Alkylated DNA repair protein.	Uncharacterized protein conserved in bacteria (DUF2086).	0.721
alkB	ada_1	SAMEA3906486_00803	SAMEA3906486_00804	Alkylated DNA repair protein.	O6-methylguanine-DNA methyltransferase.	0.865
alkB	vapB	SAMEA3906486_00803	SAMEA3906486_00801	Alkylated DNA repair protein.	Antitoxin VapB.	0.548