STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wlbCLipopolysaccharides biosynthesis aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (365 aa)    
Predicted Functional Partners:
wcaJ_2
Capsular polysaccharide biosynthesis glucosyltransferase.
 
 0.974
wcaJ_1
Capsular polysaccharide biosynthesis glucosyltransferase.
 
 0.973
rfbB_2
dTDP-glucose 4%2C6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.923
capD
Sugar nucleotide epimerase / oxidoreductase.
 
 
 0.895
wlbL
Lipopolysaccharide biosynthesis protein.
 
 
 0.880
SAI67138.1
WxcM-like%2C C-terminal.
 
 
 0.875
wcaJ_3
Exopolysaccharide biosynthesis glycosyl transferase.
 
 0.860
SAI67132.1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
 
  
  0.848
SAI73885.1
dTDP-glucose 4%2C6-dehydratase.
  
 
 0.835
wbpO
Polysaccharide biosynthesis protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.784
Your Current Organism:
Bordetella ansorpii
NCBI taxonomy Id: 288768
Other names: B. ansorpii, strain SMC-8986
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