STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAI67353.1DNA-binding protein. (87 aa)    
Predicted Functional Partners:
SAI74464.1
Uncharacterised protein.
 
 
 
 0.976
SAI67349.1
Uncharacterized conserved protein.
 
     0.801
rimO
Ribosomal protein S12 methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.775
fitB
Probable ribonuclease FitB; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
     0.554
dps
Ferritin-like DNA-binding protein; Belongs to the Dps family.
   
    0.521
yddM
Uncharacterized HTH-type transcriptional regulator YddM.
 
   
 0.518
ycaC_2
Hydrolase.
   
    0.515
ycaC_3
Hydrolase.
   
    0.515
elaB
Membrane protein.
   
  
 0.504
SAI74875.1
Bacterial protein of uncharacterised function (DUF883).
   
  
 0.504
Your Current Organism:
Bordetella ansorpii
NCBI taxonomy Id: 288768
Other names: B. ansorpii, strain SMC-8986
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