STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadD_3AMP-dependent synthetase/ligase. (548 aa)    
Predicted Functional Partners:
dltA_3
D-alanine-D-alanyl carrier protein ligase.
  
0.985
wcbR
Polyketide synthase.
 
 0.985
thcB
Oxidoreductase; Belongs to the cytochrome P450 family.
   
 0.914
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.826
dhbF
Dimodular nonribosomal peptide synthase.
  
 0.795
dltA_5
D-alanine-D-alanyl carrier protein ligase.
  
0.795
dltA_7
D-alanine-D-alanyl carrier protein ligase.
 
0.795
dltA_2
D-alanine--D-alanine ligase.
 
0.780
fadB2
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase.
  
 0.773
SAI65270.1
3-hydroxyacyl-CoA dehydrogenase oxidoreductase.
  
 0.773
Your Current Organism:
Bordetella ansorpii
NCBI taxonomy Id: 288768
Other names: B. ansorpii, strain SMC-8986
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