STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yiaOPeriplasmic substrate-binding transport protein. (324 aa)    
Predicted Functional Partners:
siaT_3
Inner membrane protein.
 
 0.989
SAI68041.1
Inner membrane transport protein.
 
 
 0.985
siaT_5
Membrane permease.
 
 0.967
yiaM
Integral membrane protein.
 
 
 0.963
siaT_6
TRAP-type transport system%2C large permease.
 
 0.881
siaT_7
TRAP dicarboxylate transporter subunit DctM.
 
 0.879
SAI71726.1
ABC transporter substrate-binding protein.
  
  
 
0.867
siaT_2
TRAP transporter%2C 4TM/12TM fusion protein.
  
  
  0.832
SAI74747.1
Integral membrane transport protein.
 
 
 0.762
dctM
TRAP-type mannitol/chloroaromatic compound transport system%2C large permease.
 
 
 0.757
Your Current Organism:
Bordetella ansorpii
NCBI taxonomy Id: 288768
Other names: B. ansorpii, strain SMC-8986
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.