ssb3 protein (Bordetella ansorpii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ssb3

Single-stranded DNA-binding protein. (146 aa)

Predicted Functional Partners:

topB2_2

0.984

dnazX

0.901

SAI69078.1

0.901

holC

0.893

priA

0.859

dnaE_1

0.859

dnaE_2

0.859

topB2_1

0.852

SAI69038.1

0.792

SAI66026.1

0.790

Your Current Organism:

Bordetella ansorpii

NCBI taxonomy Id: 288768
Other names: B. ansorpii, strain SMC-8986

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SAI66026.1	SAI69078.1	SAMEA3906486_00730	SAMEA3906486_02282	Plasmid-like protein.	Transposon.	0.756
SAI66026.1	ssb3	SAMEA3906486_00730	SAMEA3906486_02280	Plasmid-like protein.	Single-stranded DNA-binding protein.	0.790
SAI66026.1	topB2_1	SAMEA3906486_00730	SAMEA3906486_00766	Plasmid-like protein.	DNA topoisomerase III.	0.707
SAI66026.1	topB2_2	SAMEA3906486_00730	SAMEA3906486_02279	Plasmid-like protein.	DNA topoisomerase III.	0.743
SAI69038.1	SAI69078.1	SAMEA3906486_02255	SAMEA3906486_02282	Plasmid-like protein.	Transposon.	0.759
SAI69038.1	ssb3	SAMEA3906486_02255	SAMEA3906486_02280	Plasmid-like protein.	Single-stranded DNA-binding protein.	0.792
SAI69038.1	topB2_1	SAMEA3906486_02255	SAMEA3906486_00766	Plasmid-like protein.	DNA topoisomerase III.	0.703
SAI69038.1	topB2_2	SAMEA3906486_02255	SAMEA3906486_02279	Plasmid-like protein.	DNA topoisomerase III.	0.741
SAI69078.1	SAI66026.1	SAMEA3906486_02282	SAMEA3906486_00730	Transposon.	Plasmid-like protein.	0.756
SAI69078.1	SAI69038.1	SAMEA3906486_02282	SAMEA3906486_02255	Transposon.	Plasmid-like protein.	0.759
SAI69078.1	ssb3	SAMEA3906486_02282	SAMEA3906486_02280	Transposon.	Single-stranded DNA-binding protein.	0.901
SAI69078.1	topB2_1	SAMEA3906486_02282	SAMEA3906486_00766	Transposon.	DNA topoisomerase III.	0.713
SAI69078.1	topB2_2	SAMEA3906486_02282	SAMEA3906486_02279	Transposon.	DNA topoisomerase III.	0.833
dnaE_1	dnazX	SAMEA3906486_04111	SAMEA3906486_00368	DNA polymerase III subunit alpha.	DNA polymerase III subunit Tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.995
dnaE_1	holC	SAMEA3906486_04111	SAMEA3906486_04725	DNA polymerase III subunit alpha.	DNA polymerase III subunit chi.	0.995
dnaE_1	ssb3	SAMEA3906486_04111	SAMEA3906486_02280	DNA polymerase III subunit alpha.	Single-stranded DNA-binding protein.	0.859
dnaE_1	topB2_2	SAMEA3906486_04111	SAMEA3906486_02279	DNA polymerase III subunit alpha.	DNA topoisomerase III.	0.499
dnaE_2	dnazX	SAMEA3906486_05331	SAMEA3906486_00368	DNA polymerase III subunit alpha; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	DNA polymerase III subunit Tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.981
dnaE_2	holC	SAMEA3906486_05331	SAMEA3906486_04725	DNA polymerase III subunit alpha; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	DNA polymerase III subunit chi.	0.966
dnaE_2	ssb3	SAMEA3906486_05331	SAMEA3906486_02280	DNA polymerase III subunit alpha; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.	Single-stranded DNA-binding protein.	0.859