STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAI69343.1Cobalamin synthesis protein cobW C-terminal domain. (247 aa)    
Predicted Functional Partners:
yjiA_1
Uncharacterized GTP-binding protein YjiA.
 
     0.834
yjiA_3
Uncharacterized GTP-binding protein YjiA.
 
     0.773
yjiA_5
Uncharacterized GTP-binding protein YjiA.
  
     0.740
yjiA_2
Uncharacterized GTP-binding protein YjiA.
 
    
0.725
yjiA_4
Uncharacterized GTP-binding protein YjiA.
 
     0.725
dksA
dnaK suppressor protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.656
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.583
SAI69354.1
Periplasmic solute-binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.539
folE2
GTP cyclohydrolase; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.528
rpmG
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.518
Your Current Organism:
Bordetella ansorpii
NCBI taxonomy Id: 288768
Other names: B. ansorpii, strain SMC-8986
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