Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SAI70130.1 | ampD | SAMEA3906486_02913 | SAMEA3906486_02914 | Uncharacterised protein. | N-acetylmuramoyl-L-alanine amidase. | 0.700 |
| SAI70130.1 | ffh | SAMEA3906486_02913 | SAMEA3906486_02911 | Uncharacterised protein. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 0.636 |
| SAI70130.1 | futA1 | SAMEA3906486_02913 | SAMEA3906486_05521 | Uncharacterised protein. | Iron binding protein. | 0.606 |
| SAI70130.1 | ypjD | SAMEA3906486_02913 | SAMEA3906486_02912 | Uncharacterised protein. | Cytochrome assembly protein. | 0.917 |
| SAI71767.1 | ypjD | SAMEA3906486_03738 | SAMEA3906486_02912 | Uncharacterized protein conserved in bacteria. | Cytochrome assembly protein. | 0.400 |
| ampD | SAI70130.1 | SAMEA3906486_02914 | SAMEA3906486_02913 | N-acetylmuramoyl-L-alanine amidase. | Uncharacterised protein. | 0.700 |
| ampD | ffh | SAMEA3906486_02914 | SAMEA3906486_02911 | N-acetylmuramoyl-L-alanine amidase. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | 0.566 |
| ampD | ypjD | SAMEA3906486_02914 | SAMEA3906486_02912 | N-acetylmuramoyl-L-alanine amidase. | Cytochrome assembly protein. | 0.740 |
| cysG | ypjD | SAMEA3906486_00448 | SAMEA3906486_02912 | Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family. | Cytochrome assembly protein. | 0.452 |
| dsbC | ypjD | SAMEA3906486_03178 | SAMEA3906486_02912 | Thiol:disulfide interchange protein (periplasmic); Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. | Cytochrome assembly protein. | 0.555 |
| ffh | SAI70130.1 | SAMEA3906486_02911 | SAMEA3906486_02913 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | Uncharacterised protein. | 0.636 |
| ffh | ampD | SAMEA3906486_02911 | SAMEA3906486_02914 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | N-acetylmuramoyl-L-alanine amidase. | 0.566 |
| ffh | ypjD | SAMEA3906486_02911 | SAMEA3906486_02912 | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual componen [...] | Cytochrome assembly protein. | 0.730 |
| futA1 | SAI70130.1 | SAMEA3906486_05521 | SAMEA3906486_02913 | Iron binding protein. | Uncharacterised protein. | 0.606 |
| futA1 | ypjD | SAMEA3906486_05521 | SAMEA3906486_02912 | Iron binding protein. | Cytochrome assembly protein. | 0.456 |
| serB_1 | ypjD | SAMEA3906486_00571 | SAMEA3906486_02912 | Phosphoserine phosphatase. | Cytochrome assembly protein. | 0.528 |
| ypjD | SAI70130.1 | SAMEA3906486_02912 | SAMEA3906486_02913 | Cytochrome assembly protein. | Uncharacterised protein. | 0.917 |
| ypjD | SAI71767.1 | SAMEA3906486_02912 | SAMEA3906486_03738 | Cytochrome assembly protein. | Uncharacterized protein conserved in bacteria. | 0.400 |
| ypjD | ampD | SAMEA3906486_02912 | SAMEA3906486_02914 | Cytochrome assembly protein. | N-acetylmuramoyl-L-alanine amidase. | 0.740 |
| ypjD | cysG | SAMEA3906486_02912 | SAMEA3906486_00448 | Cytochrome assembly protein. | Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family. | 0.452 |
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