STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livH_13ABC transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family. (285 aa)    
Predicted Functional Partners:
livH_12
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
  0.975
livF_4
Branched chain amino acid ABC transporter ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.965
lptB_5
Branched-chain amino acid ABC transporter ATP-binding protein.
 
  0.963
livF_12
Branched-chain amino acid ABC transporter ATP-binding protein.
 
 
  0.959
braC_6
Branched-chain amino acid-binding protein.
 
 
  0.942
SAI72655.1
Branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.911
SAI71581.1
Branched-chain amino acid transport system%2C permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.910
lptB_2
Branched-chain amino acid ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.891
livH_9
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
  0.888
glnQ_5
Branched-chain amino acid transport system protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.880
Your Current Organism:
Bordetella ansorpii
NCBI taxonomy Id: 288768
Other names: B. ansorpii, strain SMC-8986
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