gsiD_4 protein (Bordetella ansorpii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gsiD_4

ABC transporter inner membrane protein. (302 aa)

Predicted Functional Partners:

gsiA_13

0.972

gsiC_8

0.970

ptpS

0.959

appA_3

0.909

gsiA_6

0.882

gsiC_3

0.876

gsiC_9

0.874

gsiC_4

0.873

gsiC_7

0.873

gsiC_11

0.873

Your Current Organism:

Bordetella ansorpii

NCBI taxonomy Id: 288768
Other names: B. ansorpii, strain SMC-8986

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
appA_3	gsiA_13	SAMEA3906486_03245	SAMEA3906486_03247	Extracellular solute-binding protein.	Peptide ABC transporter%2C ATP-binding protein; Belongs to the ABC transporter superfamily.	0.669
appA_3	gsiA_6	SAMEA3906486_03245	SAMEA3906486_01120	Extracellular solute-binding protein.	Peptide ABC transporter%2C ATP-binding protein; Belongs to the ABC transporter superfamily.	0.442
appA_3	gsiC_11	SAMEA3906486_03245	SAMEA3906486_04208	Extracellular solute-binding protein.	ABC transporter permease.	0.530
appA_3	gsiC_3	SAMEA3906486_03245	SAMEA3906486_01123	Extracellular solute-binding protein.	Peptide ABC-transporter permease.	0.823
appA_3	gsiC_4	SAMEA3906486_03245	SAMEA3906486_01665	Extracellular solute-binding protein.	ABC transporter permease.	0.528
appA_3	gsiC_7	SAMEA3906486_03245	SAMEA3906486_02716	Extracellular solute-binding protein.	ABC transporter permease.	0.598
appA_3	gsiC_8	SAMEA3906486_03245	SAMEA3906486_03248	Extracellular solute-binding protein.	Peptide ABC-transporter permease.	0.903
appA_3	gsiC_9	SAMEA3906486_03245	SAMEA3906486_03321	Extracellular solute-binding protein.	ABC transporter permease.	0.640
appA_3	gsiD_4	SAMEA3906486_03245	SAMEA3906486_03249	Extracellular solute-binding protein.	ABC transporter inner membrane protein.	0.909
appA_3	ptpS	SAMEA3906486_03245	SAMEA3906486_03246	Extracellular solute-binding protein.	Oligopeptide/dipeptide ABC transporter atp-binding protein-like; Belongs to the ABC transporter superfamily.	0.726
gsiA_13	appA_3	SAMEA3906486_03247	SAMEA3906486_03245	Peptide ABC transporter%2C ATP-binding protein; Belongs to the ABC transporter superfamily.	Extracellular solute-binding protein.	0.669
gsiA_13	gsiC_11	SAMEA3906486_03247	SAMEA3906486_04208	Peptide ABC transporter%2C ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease.	0.876
gsiA_13	gsiC_3	SAMEA3906486_03247	SAMEA3906486_01123	Peptide ABC transporter%2C ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide ABC-transporter permease.	0.824
gsiA_13	gsiC_4	SAMEA3906486_03247	SAMEA3906486_01665	Peptide ABC transporter%2C ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease.	0.795
gsiA_13	gsiC_7	SAMEA3906486_03247	SAMEA3906486_02716	Peptide ABC transporter%2C ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease.	0.888
gsiA_13	gsiC_8	SAMEA3906486_03247	SAMEA3906486_03248	Peptide ABC transporter%2C ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide ABC-transporter permease.	0.960
gsiA_13	gsiC_9	SAMEA3906486_03247	SAMEA3906486_03321	Peptide ABC transporter%2C ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease.	0.888
gsiA_13	gsiD_4	SAMEA3906486_03247	SAMEA3906486_03249	Peptide ABC transporter%2C ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter inner membrane protein.	0.972
gsiA_13	ptpS	SAMEA3906486_03247	SAMEA3906486_03246	Peptide ABC transporter%2C ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide/dipeptide ABC transporter atp-binding protein-like; Belongs to the ABC transporter superfamily.	0.911
gsiA_6	appA_3	SAMEA3906486_01120	SAMEA3906486_03245	Peptide ABC transporter%2C ATP-binding protein; Belongs to the ABC transporter superfamily.	Extracellular solute-binding protein.	0.442