STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EI16_01920Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)    
Predicted Functional Partners:
EI16_01545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.709
EI16_03580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.656
EI16_08335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.612
EI16_01910
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.554
EI16_01915
Molecular chaperone GroES; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.493
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.483
SlyA
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.481
EI16_01925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.443
RbbA
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.425
YhhJ
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.425
Your Current Organism:
Hydrogenovibrio marinus
NCBI taxonomy Id: 28885
Other names: DSM 11271, H. marinus, Hydrogenivibrio marinus, JCM 7688, strain MH-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.