STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EI16_02360Septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (221 aa)    
Predicted Functional Partners:
YciL
BolA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.755
EI16_05925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.647
EI16_02375
Asparaginase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
EI16_02370
Repressor; Represses a number of genes involved in the response to DNA damage (SOS response).
       0.540
PagO
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.526
Your Current Organism:
Hydrogenovibrio marinus
NCBI taxonomy Id: 28885
Other names: DSM 11271, H. marinus, Hydrogenivibrio marinus, JCM 7688, strain MH-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.