STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EI16_02520Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa)    
Predicted Functional Partners:
EI16_07100
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.715
EI16_07425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.676
EI16_09155
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.676
RbbA
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.653
accA
acetyl-CoA carboxylase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.
       0.541
EI16_02525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.524
tilS
Hypothetical protein; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.523
EI16_05865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.509
YhhJ
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.486
EI16_03240
Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.486
Your Current Organism:
Hydrogenovibrio marinus
NCBI taxonomy Id: 28885
Other names: DSM 11271, H. marinus, Hydrogenivibrio marinus, JCM 7688, strain MH-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.