STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SoxB_25'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (637 aa)    
Predicted Functional Partners:
EI16_11675
Phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.992
SoxY
Sulfur oxidation protein SoxY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.992
SoxA
Sulfur oxidation protein SoxA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.980
SoxC
Molybdopterin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.979
EI16_06610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.978
EI16_11685
Sulfur oxidation protein SoxX; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.978
EI16_07935
Rhodanese; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.910
CysN
Sulfate adenylyltransferase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
  0.900
SoxB_1
5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family.
  
  
 
0.900
EI16_06430
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.777
Your Current Organism:
Hydrogenovibrio marinus
NCBI taxonomy Id: 28885
Other names: DSM 11271, H. marinus, Hydrogenivibrio marinus, JCM 7688, strain MH-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.