STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EI16_08335Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase subunit sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.688
EI16_01920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.612
EI16_01545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.599
EI16_03580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.593
EI16_07415
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.570
EI16_08865
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.542
EI16_02960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.487
EI16_02370
Repressor; Represses a number of genes involved in the response to DNA damage (SOS response).
   
   0.445
EI16_03875
DNA polymerase V; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S24 family.
   
   0.445
EI16_03105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.434
Your Current Organism:
Hydrogenovibrio marinus
NCBI taxonomy Id: 28885
Other names: DSM 11271, H. marinus, Hydrogenivibrio marinus, JCM 7688, strain MH-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.