STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KamALysine 2,3-aminomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)    
Predicted Functional Partners:
EpmA
lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.936
efp
Elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.
 
   
 0.892
CheR
Chemotaxis protein CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
    
   0.868
EI16_10525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.686
EI16_10160
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.579
SspA
Stringent starvation protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.454
EI16_10520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.436
Your Current Organism:
Hydrogenovibrio marinus
NCBI taxonomy Id: 28885
Other names: DSM 11271, H. marinus, Hydrogenivibrio marinus, JCM 7688, strain MH-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.