STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06015.1Sulfopyruvate decarboxylase, alpha subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: sulfopyruvate decarboxylase, beta subunit; sulfopyruvate decarboxylase, alpha subunit; COGs: COG4032 thiamine-pyrophosphate-binding protein; InterPro IPR011766; KEGG: mem:Memar_0112 thiamine pyrophosphate binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; SPTR: Sulfopyruvate decarboxylase subunit beta / sulfopyruvate decarboxylase subunit alpha; TIGRFAM: sulfopy [...] (374 aa)    
Predicted Functional Partners:
EJG06014.1
Cysteate synthase; Specifically catalyzes the beta-elimination of phosphate from L-phosphoserine and the beta-addition of sulfite to the dehydroalanine intermediate to produce L-cysteate.
 
   
 0.966
EJG06012.1
PFAM: Putative Fe-S cluster; COGs: COG2000 Fe-S protein; InterPro IPR007202; KEGG: mem:Memar_0109 Fe-S cluster domain-containing protein; PFAM: Putative Fe-S cluster; SPTR: Fe-S cluster domain protein.
 
     0.945
EJG06011.1
Cobalamin synthesis protein P47K; PFAM: CobW/HypB/UreG, nucleotide-binding domain; COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR003593:IPR003495; KEGG: mem:Memar_0108 cobalamin synthesis protein, P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; SMART: ATPase, AAA+ type, core; SPTR: Cobalamin synthesis protein, P47K.
       0.933
EJG06013.1
Methanogenesis marker 16 metalloprotein; PFAM: Domain of unknown function DUF39; TIGRFAM: putative methanogenesis marker 16 metalloprotein; COGs: COG1900 conserved hypothetical protein; InterPro IPR002708:IPR001450:IPR017677; KEGG: mem:Memar_0110 hypothetical protein; PFAM: Protein of unknown function DUF39; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Putative uncharacterized protein; TIGRFAM: Putative methanogenesis marker 16 metalloprotein.
       0.933
EJG06010.1
PFAM: ABC transporter; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: mem:Memar_0107 ABC transporter-related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter-related protein.
 
     0.865
EJG06069.1
PFAM: Sugar-specific transcriptional regulator TrmB; COGs: COG1378 transcriptional regulator protein; InterPro IPR002831; KEGG: mem:Memar_1209 transcriptional regulator, TrmB; PFAM: Transcriptional regulator TrmB; SPTR: Transcriptional regulator, TrmB.
   
    0.814
EJG08023.1
PFAM: Sugar-specific transcriptional regulator TrmB; COGs: COG1378 transcriptional regulator protein; InterPro IPR002831; KEGG: mpl:Mpal_1202 transcriptional regulator, TrmB; PFAM: Transcriptional regulator TrmB; SPTR: Transcriptional regulator, TrmB.
   
    0.814
EJG08049.1
PFAM: Sugar-specific transcriptional regulator TrmB; COGs: COG1378 transcriptional regulator protein; InterPro IPR002831; KEGG: mem:Memar_0459 transcriptional regulator, TrmB; PFAM: Transcriptional regulator TrmB; SPTR: Transcriptional regulator.
   
    0.814
ribL
Cytidyltransferase-related domain protein; Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme.
    
 0.776
EJG06083.1
PFAM: Aminotransferase class-V; COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: mem:Memar_0056 aminotransferase, class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; SPTR: Phosphoserine aminotransferase apoenzyme / L-aspartate aminotransferase apoenzyme.
    
 0.775
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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