STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06069.1PFAM: Sugar-specific transcriptional regulator TrmB; COGs: COG1378 transcriptional regulator protein; InterPro IPR002831; KEGG: mem:Memar_1209 transcriptional regulator, TrmB; PFAM: Transcriptional regulator TrmB; SPTR: Transcriptional regulator, TrmB. (276 aa)    
Predicted Functional Partners:
EJG06015.1
Sulfopyruvate decarboxylase, alpha subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: sulfopyruvate decarboxylase, beta subunit; sulfopyruvate decarboxylase, alpha subunit; COGs: COG4032 thiamine-pyrophosphate-binding protein; InterPro IPR011766; KEGG: mem:Memar_0112 thiamine pyrophosphate binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; SPTR: Sulfopyruvate decarboxylase subunit beta / sulfopyruvate decarboxylase subunit alpha; TIGRFAM: sulfopy [...]
   
    0.814
EJG06070.1
Cupin 2 conserved barrel domain protein; PFAM: Cupin domain; InterPro IPR013096; KEGG: nde:NIDE3914 hypothetical protein; PFAM: Cupin 2, conserved barrel; SPTR: Putative uncharacterized protein.
 
     0.795
EJG06068.1
PFAM: Prismane/CO dehydrogenase family; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterPro IPR004137:IPR010047; KEGG: mma:MM_2301 carbon monoxide dehydrogenase; PFAM: Prismane; SPTR: Carbon monoxide dehydrogenase 2; TIGRFAM: Carbon-monoxide dehydrogenase, catalytic subunit; manually curated.
       0.545
EJG06071.1
PFAM: Sporulation protein YtfJ (Spore_YtfJ); COGs: COG3874 conserved hypothetical protein; InterPro IPR014229; KEGG: mem:Memar_0068 hypothetical protein; PFAM: Sporulation protein YtfJ; SPTR: Putative uncharacterized protein.
       0.522
EJG06072.1
PFAM: Protein of unknown function (DUF2953); KEGG: mpl:Mpal_0007 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.516
EJG06073.1
Hypothetical protein.
       0.516
EJG07761.1
PFAM: Protein of unknown function, DUF655; COGs: COG1491 RNA-binding protein; InterPro IPR007003; KEGG: mem:Memar_1959 hypothetical protein; PFAM: Protein of unknown function DUF655; SPTR: Putative uncharacterized protein.
  
     0.440
EJG06067.1
PFAM: Cupin domain; InterPro IPR013096; KEGG: mem:Memar_0351 cupin 2 domain-containing protein; PFAM: Cupin 2, conserved barrel; SPTR: Cupin 2, conserved barrel domain protein.
       0.415
EJG06114.1
Cell division control protein 6-like protein; Involved in regulation of DNA replication.
  
     0.409
nac
Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.
  
     0.408
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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