STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06125.1PFAM: KH domain; TIGRFAM: arCOG04150 universal archaeal KH domain protein; COGs: COG1094 RNA-binding protein (contains KH domains); InterPro IPR004087:IPR018111:IPR019964; KEGG: mpl:Mpal_2793 putative RNA-processing protein; SMART: K Homology; SPTR: KH type 1 domain protein; TIGRFAM: KH domain protein, archaea. (179 aa)    
Predicted Functional Partners:
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
   
 0.999
rps11
Ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
   
 0.999
rps4
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 0.999
rps6e
PFAM: Ribosomal protein S6e; COGs: COG2125 Ribosomal protein S6E (S10); HAMAP: 30S ribosomal protein S6e; InterPro IPR001377; KEGG: mbn:Mboo_2295 30S ribosomal protein S6e; PFAM: Ribosomal protein S6e; SPTR: 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.999
EJG06963.1
KEGG: mpi:Mpet_1203 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 0.997
EJG08350.1
Nucleotide binding protein PINc; PFAM: Fcf1; COGs: COG1412 Uncharacterized protein of PilT N-term./Vapc superfamily; InterPro IPR006596; KEGG: mem:Memar_2241 nucleotide binding protein, PINc; SMART: Nucleotide binding protein, PINc; SPTR: SSU processome protein Utp24.
  
 0.997
EJG08028.1
RIO-like kinase; PFAM: RIO1 family; Rio2, N-terminal; COGs: COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain; InterPro IPR000687:IPR015285:IPR018934; KEGG: mem:Memar_0482 protein of unknown function RIO1; PFAM: RIO-like kinase; RIO2 kinase, winged helix, N-terminal; SMART: RIO kinase; SPTR: Serine/threonine protein kinase.
   
 
 0.990
EJG06393.1
PFAM: Putative snoRNA binding domain; COGs: COG1498 Protein implicated in ribosomal biogenesis Nop56p homolog; InterPro IPR002687; KEGG: mem:Memar_0541 pre-mRNA processing ribonucleoprotein, binding region; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; SPTR: rRNA biogenesis protein Nop56/Nop58.
   
 
 0.989
rpl10
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.987
EJG06126.1
RIO-like kinase; PFAM: RIO1 family; COGs: COG1718 Serine/threonine protein kinase involved in cell cycle control; InterPro IPR000687:IPR018934; KEGG: mem:Memar_2499 protein of unknown function RIO1; PFAM: RIO-like kinase; SMART: RIO kinase; SPTR: Putative uncharacterized protein.
 
  
 0.985
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.