STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06126.1RIO-like kinase; PFAM: RIO1 family; COGs: COG1718 Serine/threonine protein kinase involved in cell cycle control; InterPro IPR000687:IPR018934; KEGG: mem:Memar_2499 protein of unknown function RIO1; PFAM: RIO-like kinase; SMART: RIO kinase; SPTR: Putative uncharacterized protein. (263 aa)    
Predicted Functional Partners:
rps5
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
  
 
 0.999
rps11
Ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
  
 
 0.999
rps4
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
  0.999
EJG07992.1
Nucleotide binding protein, PINc; COGs: COG1439 nucleic acid-binding protein consists of a PIN domain and a Zn-ribbon module; KEGG: mbn:Mboo_2393 nucleotide binding protein, PINc; SPTR: Nucleotide binding protein, PINc.
   
 0.999
rps6e
PFAM: Ribosomal protein S6e; COGs: COG2125 Ribosomal protein S6E (S10); HAMAP: 30S ribosomal protein S6e; InterPro IPR001377; KEGG: mbn:Mboo_2295 30S ribosomal protein S6e; PFAM: Ribosomal protein S6e; SPTR: 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
 
  0.999
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
 0.998
rps3ae
PFAM: Ribosomal S3Ae family; COGs: COG1890 Ribosomal protein S3AE; HAMAP: 30S ribosomal protein S3Ae; InterPro IPR001593; KEGG: mpi:Mpet_2009 30S ribosomal protein S3Ae; PFAM: Ribosomal protein S3Ae; SPTR: Ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 
 0.998
EJG08028.1
RIO-like kinase; PFAM: RIO1 family; Rio2, N-terminal; COGs: COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain; InterPro IPR000687:IPR015285:IPR018934; KEGG: mem:Memar_0482 protein of unknown function RIO1; PFAM: RIO-like kinase; RIO2 kinase, winged helix, N-terminal; SMART: RIO kinase; SPTR: Serine/threonine protein kinase.
  
 
0.997
rps15
PFAM: Ribosomal S13/S15 N-terminal domain; Ribosomal protein S15; COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR012606:IPR000589; KEGG: mpi:Mpet_2006 ribosomal S13S15 domain-containing protein; PFAM: Ribosomal protein S13/S15, N-terminal; Ribosomal protein S15; SPTR: 30S ribosomal protein S15P/S13e.
  
  0.997
rps2
PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein Sa(cytosolic)/S2(archaeal); COGs: COG0052 Ribosomal protein S2; InterPro IPR001865:IPR005707; KEGG: mbn:Mboo_2215 30S ribosomal protein S2; PFAM: Ribosomal protein S2; SPTR: 30S ribosomal protein S2P; TIGRFAM: Ribosomal protein S2, eukaryotic/archaeal; Belongs to the universal ribosomal protein uS2 family.
    
 0.995
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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