STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06153.1PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR002616; KEGG: ton:TON_0617 7-cyano-7-deazaguanine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; SPTR: 7-cyano-7-deazaguanine tRNA-ribosyltransferase; TIGRFAM: Queuine/other tRNA-ribosyltransferase; manually curated. (342 aa)    
Predicted Functional Partners:
nac
Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.
 
     0.866
EJG06154.1
Hypothetical protein.
       0.797
EJG06155.1
PFAM: Protein of unknown function (DUF2791); KEGG: ton:TON_1600 hypothetical ATPase; SPTR: Hypothetical ATPase.
       0.797
EJG07861.1
Protein of unknown function UPF0099; PFAM: Peptidyl-tRNA hydrolase PTH2; TIGRFAM: peptidyl-tRNA hydrolase; COGs: COG1990 conserved hypothetical protein; InterPro IPR002833; KEGG: mem:Memar_1400 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase, PTH2; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase, PTH2.
 
     0.796
EJG07665.1
PFAM: Phosphate transporter family; COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204; KEGG: mem:Memar_1038 phosphate transporter; PFAM: Phosphate transporter; SPTR: Phosphate transporter.
  
    0.790
EJG08190.1
PFAM: Phosphate transporter family; COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204; KEGG: mpi:Mpet_1964 phosphate transporter; PFAM: Phosphate transporter; SPTR: Phosphate transporter.
  
    0.790
truB
rRNA pseudouridine synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
  
  
 0.774
nnrD
YjeF-related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epi [...]
 
     0.772
EJG07874.1
PFAM: E1-E2 ATPase; YHS domain; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; COGs: COG2217 Cation transport ATPase; InterProIPR011017:IPR006122:IPR006403:IPR006416:IPR 001757:IPR006121:IPR008250:IPR005834:IPR007029; KEGG: mem:Memar_1873 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid [...]
       0.772
EJG07228.1
Class II aldolase/adducin family protein; PFAM: Class II Aldolase and Adducin N-terminal domain; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: mhu:Mhun_3173 L-fuculose phosphate aldolase; PFAM: Class II aldolase/adducin, N-terminal; SPTR: Class II aldolase/adducin-like protein.
       0.763
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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