STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06160.1PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; COGs: COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; InterPro IPR014001:IPR011545; KEGG: kfl:Kfla_0822 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: DEAD-like helicase, N-terminal; SPTR: DEAD/DEAH box helicase domain protein. (851 aa)    
Predicted Functional Partners:
EJG08256.1
PFAM: TrkA-N domain; Sodium/hydrogen exchanger family; TrkA-C domain; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family; COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR006153:IPR003148:IPR006037; KEGG: dol:Dole_0855 sodium/hydrogen exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; SPTR: Sodium/hydrogen exchanger.
   
    0.856
EJG06159.1
Hypothetical protein.
       0.773
EJG06161.1
Hypothetical protein; KEGG: pfh:PFHG_03613 conserved hypothetical protein; SPTR: Putative uncharacterized protein.
       0.757
EJG06162.1
Hypothetical protein.
       0.757
EJG06158.1
Hypothetical protein; PFAM: Domain of unknown function DUF83.
       0.668
EJG06163.1
KEGG: ppm:PPSC2_c0207 protein; SPTR: Putative uncharacterized protein.
 
     0.646
EJG06157.1
InterPro IPR004155; KEGG: mba:Mbar_A1826 hypothetical protein; PFAM: PBS lyase HEAT-like repeat; SPTR: Putative uncharacterized protein.
       0.538
EJG06339.1
PFAM: Iron-containing alcohol dehydrogenase; COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: mem:Memar_1138 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; SPTR: Iron-containing alcohol dehydrogenase.
   
    0.487
EJG08290.1
PFAM: Iron-containing alcohol dehydrogenase; COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: mma:MM_2769 iron-containing alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, iron-type; SPTR: Iron-containing alcohol dehydrogenase.
   
    0.487
EJG07457.1
PFAM: Nucleoside recognition; COGs: COG3366 conserved hypothetical protein; InterPro IPR011642; KEGG: mpi:Mpet_0063 nucleoside recognition domain-containing protein; PFAM: Nucleoside recognition; SPTR: Nucleoside recognition domain protein.
  
    0.461
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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