STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06169.1KEGG: mpi:Mpet_2675 hypothetical protein; SPTR: Putative uncharacterized protein. (59 aa)    
Predicted Functional Partners:
EJG06170.1
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
       0.773
EJG06167.1
Type III restriction protein res subunit; PFAM: Armadillo/beta-catenin-like repeat; Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014001:IPR001650:IPR004155:IPR006935; KEGG: hla:Hlac_3022 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; DNA/RNA helicase, C-terminal; PBS lyase HEAT-like repeat; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; PBS lyase HEAT-like repeat; SPTR: Type III restriction protein [...]
       0.668
EJG06168.1
Hypothetical protein.
       0.668
EJG06171.1
KEGG: mem:Memar_0550 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.447
EJG06172.1
PFAM: PKD domain; COGs: COG3291 FOG: PKD repeat; InterPro IPR000601; KEGG: mhu:Mhun_2840 PKD; PFAM: PKD; SMART: PKD; SPTR: PKD.
       0.437
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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