STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06203.1PFAM: PBS lyase HEAT-like repeat; InterPro IPR004155; KEGG: mbn:Mboo_0125 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT-like repeat; SPTR: PBS lyase HEAT domain protein repeat-containing protein. (170 aa)    
Predicted Functional Partners:
EJG06204.1
PFAM: Mechanosensitive ion channel; COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: afu:AF1546 hypothetical protein; PFAM: Mechanosensitive ion channel MscS; SPTR: Uncharacterized mscS family protein AF_1546.
       0.782
EJG06205.1
PFAM: Protein of unknown function (DUF432); COGs: COG2430 conserved hypothetical protein; InterPro IPR007366; KEGG: mem:Memar_1776 hypothetical protein; PFAM: Protein of unknown function DUF432; SPTR: Putative uncharacterized protein.
       0.782
EJG06202.1
PBS lyase HEAT domain protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155; KEGG: mem:Memar_2129 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT-like repeat; SMART: PBS lyase HEAT-like repeat; SPTR: PBS lyase HEAT domain protein repeat-containing protein.
 
    
0.739
polC
DNA polymerase II large subunit; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase.
       0.730
EJG08183.1
PFAM: PBS lyase HEAT-like repeat; InterPro IPR004155; KEGG: mem:Memar_2476 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT-like repeat; SPTR: PBS lyase HEAT domain protein repeat-containing protein.
  
     0.730
EJG08224.1
PFAM: PBS lyase HEAT-like repeat; InterPro IPR004155; KEGG: mem:Memar_2476 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT-like repeat; SPTR: PBS lyase HEAT domain protein repeat-containing protein.
  
     0.698
EJG06875.1
PFAM: HEAT repeat; InterPro IPR004155; KEGG: rrs:RoseRS_4600 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT-like repeat; SPTR: PBS lyase HEAT domain protein repeat-containing protein.
  
     0.686
EJG06350.1
PBS lyase HEAT domain protein repeat-containing protein; PFAM: HEAT repeat; COGs: COG1413 FOG: HEAT repeat; InterPro IPR000357:IPR004155; KEGG: san:gbs2074 hypothetical protein; PFAM: PBS lyase HEAT-like repeat; HEAT; SPTR: Putative uncharacterized protein gbs2074.
  
     0.666
EJG07950.1
PFAM: PBS lyase HEAT-like repeat; InterPro IPR004155; KEGG: atm:ANT_27180 hypothetical protein; PFAM: PBS lyase HEAT-like repeat; SPTR: Putative uncharacterized protein.
  
     0.645
EJG08192.1
PFAM: PBS lyase HEAT-like repeat; InterPro IPR004155; KEGG: mem:Memar_2476 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT-like repeat; SPTR: PBS lyase HEAT domain protein repeat-containing protein.
  
     0.635
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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