STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06267.1Regulatory protein ArsR; COGs: COG3398 conserved hypothetical protein; InterPro IPR001845; KEGG: mpl:Mpal_0760 transcriptional regulator, ArsR family; SMART: HTH transcriptional regulator, ArsR; SPTR: Transcriptional regulator, ArsR family. (240 aa)    
Predicted Functional Partners:
EJG06268.1
KEGG: mpl:Mpal_0759 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.827
EJG06270.1
PFAM: ABC-2 type transporter; COGs: COG1277 ABC-type transport system involved in multi-copper enzyme maturation permease component; KEGG: mem:Memar_1412 ABC-2 type transporter; SPTR: ABC-2 type transporter.
 
     0.590
EJG06271.1
PFAM: NPCBM-associated, NEW3 domain of alpha-galactosidase; TIGRFAM: conserved repeat domain; COGs: COG1470 membrane protein; InterPro IPR018905; KEGG: mpl:Mpal_0756 hypothetical protein; PFAM: Alpha-galactosidase, NPCBM associated NEW3 domain; SPTR: Putative uncharacterized protein.
 
     0.554
EJG08070.1
Hypothetical protein; COGs: COG1668 ABC-type Na+ efflux pump permease component; KEGG: mem:Memar_0393 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.551
EJG08270.1
PFAM: Chorismate mutase type II; TIGRFAM: chorismate mutase, archaeal type; InterPro IPR020822; KEGG: mpl:Mpal_1988 chorismate mutase; PFAM: Chorismate mutase, type II; SPTR: Chorismate mutase.
  
     0.519
EJG06259.1
Methyltransferase type 12; PFAM: Mitochondrial small ribosomal subunit Rsm22; InterPro IPR013217; KEGG: rci:LRC454 hypothetical protein; PFAM: Methyltransferase type 12; SPTR: Putative uncharacterized protein.
  
     0.509
EJG07746.1
Protein of unknown function UPF0044; PFAM: CRS1 / YhbY (CRM) domain; InterPro IPR001890; KEGG: mem:Memar_1974 hypothetical protein; PFAM: RNA-binding, CRM domain; SPTR: Putative uncharacterized protein; manually curated.
  
     0.501
EJG06269.1
PFAM: ABC transporter; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: mem:Memar_1411 ABC transporter-related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter-related protein.
       0.494
EJG07607.1
Flagellin domain protein; PFAM: Protein of unknown function (DUF1628); TIGRFAM: archaeal flagellin N-terminal-like domain; InterPro IPR013373:IPR012859; KEGG: mem:Memar_1218 hypothetical protein; PFAM: Protein of unknown function DUF1628; SPTR: Putative uncharacterized protein; TIGRFAM: Archaeal flagellin, N-terminal related.
  
     0.486
eif6
Translation initiation factor 6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
  
 
   0.483
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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