STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06281.1Protein of unknown function DUF6 transmembrane; PFAM: EamA-like transporter family; COGs: COG0697 Permease of the drug/metabolite transporter (DMT) superfamily; InterPro IPR000620; KEGG: mhu:Mhun_0033 hypothetical protein; PFAM: Protein of unknown function DUF6, transmembrane; SPTR: Putative uncharacterized protein. (360 aa)    
Predicted Functional Partners:
eif1a
Translation initiation factor 1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
  
    0.631
EJG06578.1
PFAM: Polyprenyl synthetase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: mem:Memar_1816 geranyltranstransferase; PFAM: Polyprenyl synthetase; SPTR: Geranylgeranyl-diphosphate synthase / farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.585
EJG06233.1
PFAM: Metallopeptidase family M24; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: mem:Memar_2091 peptidase M24; PFAM: Peptidase M24, structural domain; SPTR: Peptidase M24; Belongs to the peptidase M24B family.
    
 0.552
EJG08095.1
PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: pca:Pcar_2614 Xaa-Pro aminopeptidase; PFAM: Peptidase M24, structural domain; SPTR: Xaa-Pro aminopeptidase.
    
 0.552
EJG06279.1
Ion transport 2 domain protein; PFAM: Ion channel; InterPro IPR013099; KEGG: mbn:Mboo_0725 ion transport 2 domain-containing protein; PFAM: Ion transport 2; SPTR: Ion transport 2 domain protein.
 
     0.549
uppS
Undecaprenyl pyrophosphate synthase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
  
 
 0.549
EJG06610.1
Di-trans-poly-cis-decaprenylcistransferase; PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; COGs: COG0020 Undecaprenyl pyrophosphate synthase; InterPro IPR001441; KEGG: mem:Memar_1787 di-trans-poly-cis-decaprenylcistransferase; PFAM:Di-trans-poly-cis-decaprenylcistransferase-lik e; SPTR: Di-trans-poly-cis-decaprenylcistransferase.
  
 
 0.549
EJG06280.1
PFAM: Cupin domain; COGs: COG0662 Mannose-6-phosphate isomerase; InterPro IPR013096; KEGG: mpi:Mpet_0043 cupin 2 conserved barrel domain-containing protein; PFAM: Cupin 2, conserved barrel; SPTR: Putative uncharacterized protein.
     
 0.527
EJG08373.1
PFAM: Shikimate kinase; COGs: COG0703 Shikimate kinase; HAMAP: Shikimate kinase; InterPro IPR000623; KEGG: mem:Memar_2255 shikimate kinase; PFAM: Shikimate kinase; SPTR: Shikimate kinase.
     
 0.510
mfnA
L-tyrosine decarboxylase; Catalyzes the decarboxylation of L-tyrosine to produce tyramine for methanofuran biosynthesis. Can also catalyze the decarboxylation of L-aspartate to produce beta-alanine for coenzyme A (CoA) biosynthesis; Belongs to the group II decarboxylase family. MfnA subfamily.
  
 
 0.496
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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