STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06286.1KEGG: mem:Memar_2374 hypothetical protein; SPTR: Putative uncharacterized protein. (168 aa)    
Predicted Functional Partners:
EJG06285.1
KEGG: mem:Memar_2375 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.860
EJG06287.1
KEGG: mem:Memar_2373 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.860
EJG06283.1
KEGG: mem:Memar_2377 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.828
EJG06284.1
KEGG: mem:Memar_2376 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.828
EJG06288.1
KEGG: mem:Memar_2372 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
EJG06289.1
PFAM: Prokaryotic dksA/traR C4-type zinc finger; FmdE, Molybdenum formylmethanofuran dehydrogenase operon; COGs: COG2191 Formylmethanofuran dehydrogenase subunit E; InterPro IPR003814; KEGG: mem:Memar_2371 formylmethanofuran dehydrogenase, subunit E region; PFAM: Formylmethanofuran dehydrogenase, subunit E region; SPTR: Formylmethanofuran dehydrogenase, subunit E.
       0.485
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.