STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prf1Peptide chain release factor subunit 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. (423 aa)    
Predicted Functional Partners:
EJG07155.1
PFAM: ABC transporter; 4Fe-4S binding domain; Possible metal-binding domain in RNase L inhibitor, RLI; COGs: COG1245 ATPase RNase L inhibitor (RLI) homolog; InterPro IPR007209:IPR001450:IPR003439:IPR003593; KEGG: mpl:Mpal_1568 putative ATPase RIL; PFAM: ABC transporter-like; RNase L inhibitor RLI, possible metal-binding region; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related.
  
 
 0.995
EJG07156.1
KEGG: mem:Memar_0938 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.991
EJG07765.1
Methylase; PFAM: Methyltransferase small domain; TIGRFAM: HemK-related putative methylase; COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR004557:IPR013216; KEGG: mem:Memar_1957 putative methylase; PFAM: Methyltransferase type 11; SPTR: Putative methylase; TIGRFAM: Putative methylase.
    
 0.988
tuf
Translation elongation factor EF-1, subunit alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
  
 0.979
argS
Arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase; COGs: COG0018 Arginyl-tRNA synthetase; HAMAP: Arginyl-tRNA synthetase, class Ic; InterPro IPR001278:IPR005148:IPR015945:IPR008909; KEGG: mem:Memar_2213 arginyl-tRNA synthetase; PFAM: DALR anticodon binding; Arginyl-tRNA synthetase, class Ic, core; Arginyl tRNA synthetase, class Ic, N-terminal; SPTR: Arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.975
taw1
Wyosine base formation domain-containing protein; Component of the wyosine derivatives biosynthesis pathway that catalyzes the condensation of N-methylguanine with 2 carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine (imG-14) on guanosine-37 of tRNA(Phe).
 
     0.959
sepS
O-phosphoseryl-tRNA(Cys) synthetase; Catalyzes the attachment of O-phosphoserine (Sep) to tRNA(Cys).
 
    0.956
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 
 0.941
rpl15e
PFAM: Ribosomal L15; COGs: COG1632 Ribosomal protein L15E; HAMAP: 50S ribosomal protein L15e; InterPro IPR000439; KEGG: mpl:Mpal_2529 50S ribosomal protein L15e; PFAM: Ribosomal protein L15e; SPTR: Ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.
  
 
 0.940
rps12
Ribosomal protein S23 (S12); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
 
 
 0.922
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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