STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
EJG06366.1Methanogenesis marker protein 17; PFAM: Uncharacterized protein conserved in archaea (DUF2113); TIGRFAM: putative methanogenesis marker protein 17; COGs: COG4051 conserved hypothetical protein; InterPro IPR016762; KEGG: mem:Memar_2060 hypothetical protein; PFAM: Uncharacterised conserved protein UCP019464, methanogenesis; SPTR: Putative uncharacterized protein; TIGRFAM: Uncharacterised conserved protein UCP019464, methanogenesis. (195 aa)    
Predicted Functional Partners:
EJG06362.1
UPF0288 protein; TIGRFAM: putative methanogenesis marker protein 3; COGs: COG4070 peptidyl-prolyl cis-trans isomerase (rotamase) cyclophilin family; HAMAP: UPF0288 protein; InterPro IPR016466; KEGG: mbn:Mboo_2435 hypothetical protein; SPTR: UPF0288 protein Mboo_2435; TIGRFAM: Uncharacterised conserved protein UCP005852, methanogenesis; Belongs to the UPF0288 family.
 
     0.990
EJG06363.1
Methanogenesis marker protein 6; PFAM: Uncharacterized protein conserved in archaea (DUF2102); TIGRFAM: putative methanogenesis marker protein 6; COGs: COG4029 conserved hypothetical protein; InterPro IPR012025; KEGG: mem:Memar_2063 hypothetical protein; PFAM: Uncharacterised conserved protein UCP005642, methanogenesis; SPTR: Putative uncharacterized protein; TIGRFAM: Uncharacterised conserved protein UCP005642, methanogenesis.
 
     0.990
EJG06367.1
Methanogenesis marker protein 7; PFAM: Methyl-coenzyme M reductase operon protein C; TIGRFAM: putative methanogenesis marker protein 7; COGs: COG4052 Uncharacterized protein related to methyl coenzyme M reductase subunit C; InterPro IPR011312; KEGG: mem:Memar_2059 hypothetical protein; PFAM: Uncharacterised conserved protein UCP019164, methanogenesis; SPTR: Putative uncharacterized protein; TIGRFAM: Uncharacterised conserved protein UCP019164, methanogenesis.
 
     0.990
EJG06364.1
Methanogenesis marker protein 5; PFAM: Uncharacterized protein conserved in archaea (DUF2112); TIGRFAM: putative methanogenesis marker protein 5; COGs: COG4050 conserved hypothetical protein; InterPro IPR012356; KEGG: mem:Memar_2062 hypothetical protein; PFAM: Uncharacterised conserved protein UCP018781, methanogenesis; SPTR: Putative uncharacterized protein; TIGRFAM: Uncharacterised conserved protein UCP018781, methanogenesis.
 
     0.989
EJG06365.1
Methanogenesis marker protein 15; PFAM: BadF/BadG/BcrA/BcrD ATPase family; TIGRFAM: CoA-substrate-specific enzyme activase, putative; putative methanogenesis marker protein 15; COGs: COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain); InterPro IPR017676:IPR008275:IPR002731; KEGG: mem:Memar_2061 putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; SPTR: Putative CoA-substrate-specific enzyme activase; TIGRFAM: Putative methanogenesis marker protein 15; CoA enzyme activase.
 
     0.986
EJG06361.1
PFAM: ABC transporter; TIGRFAM: methyl coenzyme M reductase system, component A2; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR017669:IPR003439:IPR003593; KEGG: mbn:Mboo_2434 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; TIGRFAM: Methyl coenzyme M reductase system, component A2.
 
     0.985
EJG06368.1
PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain; COGs: COG0599 gamma-carboxymuconolactone decarboxylase subunit; InterPro IPR004675:IPR003779; KEGG: mem:Memar_2058 alkylhydroperoxidase; PFAM: Carboxymuconolactone decarboxylase; SPTR: Alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core.
 
     0.908
EJG06360.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; COGs: COG4087 Soluble P-type ATPase; InterPro IPR005834; KEGG: mem:Memar_2066 hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Haloacid dehalogenase domain protein hydrolase.
 
     0.840
EJG06468.1
PFAM: Methyl-coenzyme M reductase operon protein C; TIGRFAM: methyl-coenzyme M reductase I operon protein C; COGs: COG4056 Methyl coenzyme M reductase subunit C; InterPro IPR007687; KEGG: mpl:Mpal_2307 methyl-coenzyme M reductase I operon protein C; PFAM: Methyl-coenzyme M reductase, protein C; SPTR: Methyl-coenzyme M reductase I operon protein C; TIGRFAM: Methyl-coenzyme M reductase, protein C.
 
     0.778
EJG06469.1
PFAM: Methyl-coenzyme M reductase operon protein D; TIGRFAM: methyl-coenzyme M reductase operon protein D; COGs: COG4055 Methyl coenzyme M reductase subunit D; InterPro IPR003901; KEGG: mpl:Mpal_2306 methyl-coenzyme M reductase operon protein D; PFAM: Methyl-coenzyme M reductase, protein D; SPTR: Methyl-coenzyme M reductase operon protein D; TIGRFAM: Methyl-coenzyme M reductase, protein D.
 
     0.752
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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