STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG06382.1PFAM: Uncharacterized protein conserved in bacteria (DUF2179); COGs: COG4843 conserved hypothetical protein; HAMAP: UPF0316 protein; InterPro IPR019264; KEGG: mem:Memar_1511 hypothetical protein; PFAM: Protein of unknown function DUF2179; SPTR: UPF0316 protein Memar_1511. (192 aa)    
Predicted Functional Partners:
EJG06383.1
Amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR010168:IPR002933:IPR011650; KEGG: sat:SYN_00083 metal-dependent amidase/aminoacylase/carboxypeptidase; PFAM: Peptidase M20; Peptidase M20, dimerisation; SPTR: Metal-dependent amidase/aminoacylase/carboxypeptidase; TIGRFAM: Peptidase M20D, amidohydrolase.
       0.768
EJG06384.1
PFAM: Mechanosensitive ion channel; COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685; KEGG: rci:LRC408 putative small-conductance mechanosensitive ion channel; PFAM: Mechanosensitive ion channel MscS; SPTR: Putative small-conductance mechanosensitive ion channel.
       0.563
EJG07668.1
PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: putative nicotinate phosphoribosyltransferase; COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR002638; KEGG: mbn:Mboo_0766 quinolinate phosphoribosyl transferase; PFAM: Quinolinate phosphoribosyl transferase; SPTR: Quinolinate phosphoribosyl transferase.
 
    0.494
EJG07109.1
PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase; COGs: COG0015 Adenylosuccinate lyase; InterPro IPR000362:IPR019468:IPR004769; KEGG: mpi:Mpet_1919 adenylosuccinate lyase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal; SPTR: Adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.407
nadE
NH(3)-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.
       0.407
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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